Show
Alignment View
Pairwise
Pairwise with dots for identities
Query-anchored with dots for identities
Query-anchored with letters for identities
Flat query-anchored with dots for identities
Flat query-anchored with letters for identities
[?]
Choose how to view alignments.
The default "pairwise" view shows how each subject sequence aligns
individually to the query sequence. The "query-anchored" view shows how
all subject sequences align to the query sequence. For each view type,
you can choose to show "identities" (matching residues) as letters or
dots.
more...
Display
Masking
Character:
X for protein, n for nucleotide
Lower Case
Color:
Black
Grey
Red
[?]
Masking Character: Display masked (filtered) sequence regions as
lower-case or as specific letters (N for nucleotide, P for protein).
Masking Color: Display masked sequence regions in the given color.
Limit results
Descriptions:
10
50
100
Graphical overview:
0
10
50
100
Alignments:
0
10
50
100
Line length:
60
90
120
150
[?]
Descriptions: Show short descriptions for up to the given number of sequences.
Alignments: Show alignments for up to the given number of sequences, in order of statistical significance.
Line lenghth: Number of letters to show on one line in an alignment.
Format for